Virtualbox images
BioLinux
EMBNet Biolinux Image
BioLinux 8 Latest
Bio-Linux is a fully featured, powerful, configurable and easy to maintain bioinformatics workstation. Bio-Linux provides more than 500 bioinformatics programs on an Ubuntu Linux base. There is a graphical menu for bioinformatics programs, as well as easy access to the Bio-Linux bioinformatics documentation system and sample data useful for testing programs.
RSAT
RSAT Ubuntu 14 Desktop Image
RSAT Ubuntu 14 Server Image
RSAT offers a series of tools dedicated to the detection of regulatory signals in non-coding sequences. The only input required is a list of genes of interest (e.g. a family of co-regulated genes). From this information, you can retrieve the upstream sequences over a desired distance, discover putative regulatory signals, search the matching positions for these signals in your original dataset or in whole genomes, and display the results graphically in the form of a feature map.
About RSAT Image: Please click here to get installation guidelines.
Chipster
Chipster Image
Chipster is a user-friendly analysis software for high-throughput data. It contains over 300 analysis tools for next generation sequencing (NGS), microarray, proteomics and sequence data. Users can save and share automatic analysis workflows, and visualize data interactively using a built-in genome browser and many other visualizations.
About Chipster Image: Please click here to get installation guidelines.
GMOD in a Box
GMOD in a Box
GMOD in a Box is a GMOD virtual server equipped with a suite of preconfigured GMOD components, including a Chado database, GBrowse2, JBrowse, Tripal, and Apollo or WebApollo. Setting up a GMOD in a Box instance is quick and easy; it even comes with demo data to explore if you do not have your own. If you are investigating GMOD for the first time, GMOD in a Box provides an excellent way to assess GMOD components without having to do any installation; for longer-term uses, the virtual server can be kept running as long as required, and data can easily be moved when new versions of GMOD in a Box are released.
About GMOD in a Box Image: Please click here to get installation guidelines.
Utilities
| Name | Unix 32bit | Unix 64bit | Windows 32bit | Windows 64bit | Mac OS | Other | |
|---|---|---|---|---|---|---|---|
| Firefox 32 | UNIX 32bit Bz2 | UNIX 64bit Bz2 | Windows 32bit EXE | - | Mac OS DMG | - | |
| Google Chrome | Unix 32bit DEB file | Unix 64bit DEB file | Windows 32bit EXE | Windows 64bit EXE | Mac OS DMG | - | |
| Java (JRE 7u67 ) | Linux x86 (gz file) | Linux x64 (gz file) | Windows x86 (exe file) | Windows x86 (exe file) | Mac OSX (dmg file) | JLinux x86 (rpm file)Linux x64 (rpm file) | |
| Filezilla | Unix i586 | Unix 64bit | Windows 32bit | Windows x64 | OS X 10.7 or newer | Sources | |
| Sublime Text | UNIX 32bit | Unix 64bit | Windows 32bit | Windows 64bit | Mac OS X | - | |
| Virtual Box | Unix 32bit | Unix 64bit | Windows 32bit | Windows 64bit | Mac OS X | - | |
| npp | - | - | Windows 32bit | Windows 64bit | - | - | |
| Putty | - | - | Windows EXE | Windows EXE | - | - | |
| Puttygen | - | - | Windows EXE | Windows EXE | - | - | |
| IGV | - | - | Windows 32bit | Windows 64bit | Mac OS X | - |
Other resources
Looking for other tools? Please take a look to the Other tools section and our Resources page.