RNAmmer predicts genes for ribosomal RNA (rRNA) in full genome sequences using hidden Markov models trained on data from the 5S ribosomal RNA database and the European ribosomal RNA database project.
RNAmmer 1.2 for Linux
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Please, read the RNAmmer installation manual.
Note: RNAmmer uses HMMER tools, you can download HMMER tool from the Other tools section.