Staden package

Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows
The Staden package consists of a number of different programs. The main components are:

  • pregap4 – base calling with Phred, end clipping, and vector trimming.
  • trev – trace viewing and editing
  • gap4 – sequence assembly, contig editing, and finishing
  • gap5 – assembly visualisation, editing and finishing of NGS data
  • Spin – DNA and protein sequence analysis